The following are a portion of the notes we will cover Monday, 17 September, in Biology 110.  Note that they are NOT complete; you will be filling in the blanks in class.

PROTEINS
Different types of proteins function in different ways:
Functions of proteins:                                        -->speed up metabolic rxns
                                                                          -->make up many animal/plant structures ex:bone, feathers, webs
                                                                          -->move other molecules
                                                                          -->energy source
                                                                          -->affect function of other molecules
                                                                          -->recognize & destroy invaders

All types of proteins come from 
Amino acid =
 

Primary structure = sequence of amino acids
Amino acids are linked by                                     = covalent bond between amino group of one amino acid with the acid group
  (carboxyl) of another amino acid

3 or more amino groups joined with peptide bonds =                                     -->incorporates N into "backbone"

    -N-C-C-N-C-C-N-C-C-N-C-C-N-
   backbone of polypetide chain

Each protein is coded for by specific combinations of the 20 available amino acids

Primary structure of proteins=                                                            =unique to each protein-->determined by DNA

3-D Structure of Proteins
1.  Fibrous proteins=                                                                                                ex: cilia (movement of cells)
2. Globular proteins=                                                                                                ex: enzymes
3.  Combination of fibrous & globular

3-D shape determined by the primary structure-->way atoms are arranged & amino acid seq.
-->depending on arrangement-->may cause polypeptide to 
 -->Affects interaction rate                                                                                                     ;
Especially important for 

Primary structure affects shape in the following ways:
1.  patterns of                                                                     between the O- (of the carboxyl group) & other atoms of the amino acid causes coiling or extension = 
2.  secondary structure puts                                      in positions that allow them to interact-->causes it to bend & twist= 
3.  bending, twisting, & extension caused by secondary and tertiary structure may cause it the protein to                                                                                    =

ex:  hemoglobin=                                     (with secondary, tertiary, and quartenary structure)
keratin (hair)=                                      (with secondary, tertiary, and quartenary structure)
collagen(skin, bone, tendons)=                                     (with secondary, tertiary, and quartenary structure)

Denaturation
  Protein loses                                       due to                                       (both hydrogen bonds & R group bonds)
  Unwind, change shape-->                                     as enzymes
Does NOT cause protein to lose                                     
 Ex:  egg white (=                                     ); add heat-->causes protein                                                                          (3-D shape) but does not change                                                                 -->still albumin, however can no longer function

Enzymes=                                                                                                
 ex:  lactase                                                       the breakdown (breaking bonds) of                                      =sugar in cowís milk

5 categories of rxns controlled by enzymes:
 1.                                                                           =move function group from one molecule to another
 2.                                                                           =1 or more e- stripped from one molecule & passed to another
 3.                                                                           =Change of internal bonds on molecule-->converts to new, more reactive, molecule
 4.                                                                           =2 molecules combine to form a larger molecule
 5.                                                                           =1 larger molecule splits into 2 smaller

Ex:  condensation rxn
production of a polysaccharide from monosaccharides
enzyme removes                                       from one molecule &                                        from another (type of reaction?)
-->                                                                                                                            
 This is how starch forms=                                     =large molecule formed from the bonding of many smaller subunits
 
Another ex:  Hydrolysis
special type of                                                         
  Enzyme causes breaks at functional groups-->splits large molecule into                                      -->involves                                      and an enzyme